Get protein features by protein identifiers, protein positions, or isoform ids

URL form

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/<operation>/?ids=<identifiers>&features=<features>&isoform_ids=<isoform id>&taxon=<taxon id>

<operation> = searchProtFeaturesByGene

<identifiers> = case insensitive only search for human proteins, accept csv form, for an example, MTOR,MYC

<features> = sequence feature name(s) e.g. helix, active site, chain, etc.

<isoform_ids> = isoform identifier e.g. P38398-2

<taxon> = taxon identifier e.g. 9606. Default is set to human taxon id, 9606

Examples:

Get protein features for human MTOR in xml format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchProtFeaturesByGene.xml?ids=MTOR&features=domain,repeat

Get protein features for human MTOR in json format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchProtFeaturesByGene?ids=MTOR&features=domain,repeat

Get protein features for chimpazee MTOR in xml format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchProtFeaturesByGene.xml?ids=MTOR&taxon=9598

Get protein features for chimpazee MTOR in json format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchProtFeaturesByGene?ids=MTOR&taxon=9598

Get isoform features (intact only) for P38398-2 (BRCA1) and P01116-2 (KRAS) in json format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchProtFeaturesByGene?isoform_ids=P38398-2,P01116-2

Get isoform features (intact only) for P38398-2 (BRCA1) and P01116-2 (KRAS) in xml format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchProtFeaturesByGene.xml?isoform_ids=P38398-2,P01116-2

Get protein features that are affected by variant MTOR:8 in json format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchProtFeaturesByGene?ids=MTOR:8

Get isoform identifiers by protein name(s), UniProt accession(s), or UniProt entry name(s)

URL form

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/<operation>/?ids=<proteinId(s)>&taxon=<taxon id>

<operation> = searchIsoformIds

<proteinId(s)> = protein Id(s) case insensitive, accept csv form (MTOR, Q6P4E1)

<taxon> = taxon identifier e.g. 9606. Default is set to human taxon id, 9606

Examples:

Get isoform identifiers for CASC4_HUMAN in xml format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchIsoformIds.xml?ids=casc4_human

Get isoform identifiers for CASC4_HUMAN in json format

https://botdb.abcc.ncifcrf.gov/cyprus/rest/v1/searchIsoformIds?ids=casc4_human